hamap.expasy.orgHAMAP - Protein Classification and Annotation System

Browse List all rules Browse by enzyme class Browse by feature key Browse by GO terms Browse by keyword Browse by taxonomic scope HAMAP-Scan Proteomes Summary page Archaea Bacteria Documentation Downloads About Contact HAMAP - High-quality Automated and Manual Annotation of Proteins HAMAP is a system for the classification and annotation of protein sequences. It consists of a collection of manually curated family profiles for protein classification, and associated, manually created annotation rules that specify annotations that apply to family members. HAMAP is used to annotate protein records in UniProtKB via UniProt’s automatic annotation pipeline . We also provide an interface to scan user sequences against HAMAP family profiles [ More... ]. Last updated for UniProt release 2024_02 ( 27-Mar-2024 ) Number of family profiles: 2’389 Number of annotation rules: 2’422 Search Field All Rules Accession [AC] Trigger (Profile) [TR] Template Comments Taxonomic scope Annotations Entry name [ID] Protein name [DE] Gene name [GN] General annotation [CC] Sequence annotation [FT] Keyword [KW] Gene Ontology [GO] Cross-reference [DR] Term e.g. recA , MF_00191 , Iron The wildcard * is supported. Reset HAMAP-Scan Quickly find matches of your protein sequences to HAMAP family profiles (max. 1’000 sequences). Examples More options If you want to submit more than 1’000 sequences, or if you want to have your sequences annotated in UniProtKB format by using HAMAP annotation rules, use the Advanced HAMAP-Scan submission form Questions? Comments? Please send us your feedback . HAMAP in 2015: updates to the protein family classification and annotation system. Nucleic Acids Res. 43:D1064-D1070(2015).Expasy is operated by the SIB Swiss Institute of Bioinformatics Terms of Use | Privacy policy Back to the...